Transcript: lnc-ZNF136-1:2

Basic information

LNCipedia transcript ID: lnc-ZNF136-1:2 
LNCipedia gene ID: lnc-ZNF136-1
Location (hg38): chr19:12195015-12207697
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 495 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000415793; ENST00000415793.1; CTD-2666L21.1-003; OTTHUMT00000344138.1; ENST00000415793.5
Alternative gene names: ENSG00000234773; CTD-2666L21.1; ENSG00000234773.1; OTTHUMG00000156425.1; ENSG00000234773.2; ENSG00000234773.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -52.3595 non-coding 
CPAT coding probability 49.57% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZNF136-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF136-1:2
3.1 lnc-ZNF136-1:2
4.0 lnc-ZNF136-1:2
4.1 lnc-ZNF136-1:2
5.0 lnc-ZNF136-1:2
5.1 lnc-ZNF763-4:6
5.2 lnc-ZNF136-1:2