Transcript: lnc-ZNF136-1:3

Basic information

LNCipedia transcript ID: lnc-ZNF136-1:3 
LNCipedia gene ID: lnc-ZNF136-1
Location (hg38): chr19:12195017-12237767
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 917 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000426044; ENST00000426044.1; CTD-2666L21.1-001; OTTHUMT00000344136.1
Alternative gene names: ENSG00000234773; CTD-2666L21.1; ENSG00000234773.1; OTTHUMG00000156425.1; ENSG00000234773.2; ENSG00000234773.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.7586 non-coding 
CPAT coding probability 13.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF136-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF136-1:3
3.1 lnc-ZNF136-1:3
4.0 lnc-ZNF136-1:3
4.1 lnc-ZNF136-1:3
5.0 lnc-ZNF136-1:3
5.1 lnc-ZNF763-4:14
5.2 lnc-ZNF136-1:3