Transcript: lnc-ZNF136-1:4

Basic information

LNCipedia transcript ID: lnc-ZNF136-1:4 
LNCipedia gene ID: lnc-ZNF136-1
Location (hg38): chr19:12195088-12208379
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 581 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000451691; ENST00000451691.1; CTD-2666L21.1-004; OTTHUMT00000344139.1; NONHSAT061235
Alternative gene names: ENSG00000234773; CTD-2666L21.1; ENSG00000234773.1; OTTHUMG00000156425.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.8505 non-coding 
CPAT coding probability 1.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF136-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF136-1:4
3.1 lnc-ZNF136-1:4
4.0 lnc-ZNF136-1:4
4.1 lnc-ZNF136-1:4
5.0 lnc-ZNF136-1:4
5.1 lnc-ZNF763-4:15
5.2 lnc-ZNF136-1:4