Transcript: lnc-ZNF22-2:1

Basic information

LNCipedia transcript ID: lnc-ZNF22-2:1 
LNCipedia gene ID: lnc-ZNF22-2
Location (hg38): chr10:45147394-45149725
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 629 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000427229.1; RP11-445N18.7-001; OTTHUMT00000047773.1; NONHSAT139971
Alternative gene names: ENSG00000243349.1; RP11-445N18.7; OTTHUMG00000018074.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.4164 non-coding 
CPAT coding probability 14.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF22-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF22-2:1
4.0 lnc-ZNF22-2:1
4.1 lnc-ZNF22-2:1
5.0 lnc-ZNF22-2:1
5.1 lnc-NPY4R2-54:2
5.2 lnc-ZNF22-2:1