Transcript: lnc-ZNF236-11:5

Basic information

LNCipedia transcript ID: lnc-ZNF236-11:5 
LNCipedia gene ID: lnc-ZNF236-11
Ensembl Gene ID: ENSG00000264212
Ensembl Transcript ID: ENST00000579833
Location (hg38): chr18:76256891-76258337
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 922 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000579833.1; RP11-94B19.3-001; OTTHUMT00000444930.1; NONHSAT059924
Alternative gene names: ENSG00000264212.1; RP11-94B19.3; OTTHUMG00000179136.1; AC103808.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -186.5978 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF236-11:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-17M16.1.1-6:5
4.0 lnc-RP11-17M16.1.1-6:5
4.1 lnc-RP11-17M16.1.1-6:5
5.0 lnc-RP11-17M16.1.1-6:5
5.1 lnc-KCNG2-36:5
5.2 lnc-ZNF236-11:5