Transcript: lnc-ZNF236-13:1

Basic information

LNCipedia transcript ID: lnc-ZNF236-13:1 
LNCipedia gene ID: lnc-ZNF236-13
Ensembl Gene ID: ENSG00000263547
Ensembl Transcript ID: ENST00000584677
RefSeq ID: NR_040034
Location (hg38): chr18:76122998-76145255
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2794 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000584677.1; RP11-1O2.1-001; OTTHUMT00000444923.1; NONHSAT059904; NR_040034; NR_040034.1
Alternative gene names: ENSG00000263547.1; RP11-1O2.1; OTTHUMG00000179130.1; AC011095.1; LOC339298


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.0795 non-coding 
CPAT coding probability 7.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF236-13:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-17M16.1.1-9:1
4.0 lnc-RP11-17M16.1.1-9:1
4.1 lnc-RP11-17M16.1.1-9:1
5.0 lnc-RP11-17M16.1.1-9:1
5.1 lnc-KCNG2-39:1
5.2 lnc-ZNF236-13:1