Transcript: lnc-ZNF236-1:6

Basic information

LNCipedia transcript ID: lnc-ZNF236-1:6 
LNCipedia gene ID: lnc-ZNF236-1
Ensembl Gene ID: ENSG00000266844
Ensembl Transcript ID: ENST00000582546
Location (hg38): chr18:76981712-76984082
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 812 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000582546.1; RP11-862L9.3-005; OTTHUMT00000445788.1; NONHSAT059972
Alternative gene names: ENSG00000266844.1; RP11-862L9.3; OTTHUMG00000179333.1; AC093330.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.7529 non-coding 
CPAT coding probability 24.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF236-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF236-1:6
4.0 lnc-ZNF236-1:6
4.1 lnc-ZNF236-1:6
5.0 lnc-ZNF236-1:6
5.1 lnc-KCNG2-29:6
5.2 lnc-ZNF236-1:6