Transcript: lnc-ZNF236-9:1

Basic information

LNCipedia transcript ID: lnc-ZNF236-9:1 
LNCipedia gene ID: lnc-ZNF236-9
Ensembl Gene ID: ENSG00000263982
Ensembl Transcript ID: ENST00000583287
Location (hg38): chr18:76372717-76378275
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 398 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000583287.1; RP11-504I13.3-001; OTTHUMT00000444932.1; NONHSAT059927
Alternative gene names: ENSG00000263982.1; RP11-504I13.3; OTTHUMG00000179138.1; AC009716.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -151.8799 non-coding 
CPAT coding probability 2.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF236-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-17M16.1.1-4:1
4.0 lnc-RP11-17M16.1.1-4:1
4.1 lnc-RP11-17M16.1.1-4:1
5.0 lnc-RP11-17M16.1.1-4:1
5.1 lnc-KCNG2-35:1
5.2 lnc-ZNF236-9:1