Transcript: lnc-ZNF248-1:1

Basic information

LNCipedia transcript ID: lnc-ZNF248-1:1 
LNCipedia gene ID: lnc-ZNF248-1
Ensembl Gene ID: ENSG00000226578
Ensembl Transcript ID: ENST00000432530
Location (hg38): chr10:37775371-37784131
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 712 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017954; ENST00000432530; ENST00000432530.1; RP11-258F22.1-001; OTTHUMT00000047602.1; NONHSAT012786
Alternative gene names: XLOC_008781; linc-MTRNR2L7; ENSG00000226578; RP11-258F22.1; ENSG00000226578.1; OTTHUMG00000017976.1; AL132657.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.1824 non-coding 
CPAT coding probability 0.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF248-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF248-1:1
3.1 lnc-ZNF248-1:1
4.0 lnc-ZNF248-1:1
4.1 lnc-ZNF248-1:1
5.0 lnc-ZNF248-1:1
5.1 lnc-CUL2-34:1
5.2 lnc-ZNF248-1:1