Transcript: lnc-ZNF280D-3:2

Basic information

LNCipedia transcript ID: lnc-ZNF280D-3:2 
LNCipedia gene ID: lnc-ZNF280D-3
Ensembl Gene ID: ENSG00000285331
Ensembl Transcript ID: ENST00000561122
RefSeq ID: NR_015419
Location (hg38): chr15:56886170-56918499
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3017 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Refseq - Dec 2014; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000504158; ENST00000561122.1; RP11-323F24.1-001; OTTHUMT00000419453.1; NONHSAT044034; NR_015419; NR_015419.2
Alternative gene names: ENSG00000248500; ENSG00000259484.1; RP11-323F24.1; OTTHUMG00000172613.1; LOC145783; ENSG00000285331.1; AC010999.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -25.9528 non-coding 
CPAT coding probability 39.95% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZNF280D-3:2 yes no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MNS1-1:1
3.1 lnc-MNS1-3:1
4.0 lnc-MNS1-3:1
4.1 lnc-MNS1-3:1
5.0 lnc-MNS1-3:1
5.1 lnc-DNAAF4-38:1
5.2 lnc-ZNF280D-3:2