Transcript: lnc-ZNF280D-3:3

Basic information

LNCipedia transcript ID: lnc-ZNF280D-3:3 
LNCipedia gene ID: lnc-ZNF280D-3
Ensembl Gene ID: ENSG00000285331
Ensembl Transcript ID: ENST00000560587
Location (hg38): chr15:56916726-56918493
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1441 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560587.1; RP11-323F24.1-002; OTTHUMT00000419454.1; NONHSAT044035
Alternative gene names: ENSG00000259484.1; RP11-323F24.1; OTTHUMG00000172613.1; ENSG00000285331.1; AC010999.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -169.4782 non-coding 
CPAT coding probability 15.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF280D-3:3 yes no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MNS1-3:2
4.0 lnc-MNS1-3:2
4.1 lnc-MNS1-3:2
5.0 lnc-MNS1-3:2
5.1 lnc-DNAAF4-38:2
5.2 lnc-ZNF280D-3:3