Transcript: lnc-ZNF286A-51:1

Basic information

LNCipedia transcript ID: lnc-ZNF286A-51:1 
LNCipedia gene ID: lnc-ZNF286A-51
Ensembl Gene ID: ENSG00000232058
Ensembl Transcript ID: ENST00000446671
Location (hg38): chr17:15014805-15052276
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 976 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00025160; ENST00000446671; ENST00000446671.1; AC005772.2-001; OTTHUMT00000130709.1; NONHSAT145785
Alternative gene names: XLOC_012120; linc-ZNF286A-1; ENSG00000232058; AC005772.2; ENSG00000232058.1; OTTHUMG00000059072.1; AC005772.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.5776 non-coding 
CPAT coding probability 1.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF286A-51:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF286A-3:1
3.1 lnc-ZNF286A-6:1
4.0 lnc-ZNF286A-6:1
4.1 lnc-ZNF286A-6:1
5.0 lnc-ZNF286A-6:1
5.1 lnc-GLP2R-51:1
5.2 lnc-ZNF286A-51:1