Transcript: lnc-ZNF30-3:1

Basic information

LNCipedia transcript ID: lnc-ZNF30-3:1 
LNCipedia gene ID: lnc-ZNF30-3
Location (hg38): chr19:34839061-34852485
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2636 bp
Exons: 5
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00027518; NONHSAT065167
Alternative gene names: XLOC_013045; linc-ZNF30-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.3069 non-coding 
CPAT coding probability 44.14% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZNF30-3:1 no no no no

Available literature

  1. Chen (2015), Potential Role of lncRNAs in Contributing to Pathogenesis of Intervertebral Disc Degeneration Based on Microarray Data., Med. Sci. Monit.
  2. Zhi (2014), A novel reannotation strategy for dissecting DNA methylation patterns of human long intergenic non-coding RNAs in cancers., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF30-3:1
3.1 lnc-ZNF30-3:1
4.0 lnc-ZNF30-3:1
4.1 lnc-ZNF30-3:1
5.0 lnc-ZNF30-3:1
5.1 lnc-GPI-18:4
5.2 lnc-ZNF30-3:1