Transcript: lnc-ZNF30-3:2

Basic information

LNCipedia transcript ID: lnc-ZNF30-3:2 
LNCipedia gene ID: lnc-ZNF30-3
Ensembl Gene ID: ENSG00000269086
Ensembl Transcript ID: ENST00000601776
Location (hg38): chr19:34839182-34855304
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5302 bp
Exons: 5
Sources: Broad Institute; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00026786; NONHSAT065168; ENST00000601776.1
Alternative gene names: XLOC_013045; linc-ZNF30-3; ENSG00000269086.2; CTC-523E23.5; AC008555.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.3069 non-coding 
CPAT coding probability 2.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF30-3:2 no no no no

Available literature

  1. Chen (2015), Potential Role of lncRNAs in Contributing to Pathogenesis of Intervertebral Disc Degeneration Based on Microarray Data., Med. Sci. Monit.
  2. Zhi (2014), A novel reannotation strategy for dissecting DNA methylation patterns of human long intergenic non-coding RNAs in cancers., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF30-3:2
3.1 lnc-ZNF30-3:2
4.0 lnc-ZNF30-3:2
4.1 lnc-ZNF30-3:2
5.0 lnc-ZNF30-3:2
5.1 lnc-GPI-18:5
5.2 lnc-ZNF30-3:2