Transcript: lnc-ZNF30-3:3

Basic information

LNCipedia transcript ID: lnc-ZNF30-3:3 
LNCipedia gene ID: lnc-ZNF30-3
Location (hg38): chr19:34841823-34849549
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 610 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026998; NONHSAT065173
Alternative gene names: XLOC_013045; linc-ZNF30-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.1349 non-coding 
CPAT coding probability 0.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF30-3:3 no no no no

Available literature

  1. Chen (2015), Potential Role of lncRNAs in Contributing to Pathogenesis of Intervertebral Disc Degeneration Based on Microarray Data., Med. Sci. Monit.
  2. Zhi (2014), A novel reannotation strategy for dissecting DNA methylation patterns of human long intergenic non-coding RNAs in cancers., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF30-3:3
3.1 lnc-ZNF30-3:3
4.0 lnc-ZNF30-3:3
4.1 lnc-ZNF30-3:3
5.0 lnc-ZNF30-3:3
5.1 lnc-GPI-18:7
5.2 lnc-ZNF30-3:3