Transcript: lnc-ZNF316-3:1

Basic information

LNCipedia transcript ID: lnc-ZNF316-3:1 
LNCipedia gene ID: lnc-ZNF316-3
Ensembl Gene ID: ENSG00000228010
Ensembl Transcript ID: ENST00000366167
Location (hg38): chr7:6663974-6708901
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 564 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000366167.2; AC073343.13-001; OTTHUMT00000326013.1; NONHSAT119054
Alternative gene names: ENSG00000228010.1; AC073343.13; OTTHUMG00000152372.1; ENSG00000228010.5; AC073343.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.8797 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF316-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC073343.1-1:1
4.0 lnc-AC073343.1-1:1
4.1 lnc-AC073343.1-1:1
5.0 lnc-AC073343.1-1:1
5.1 lnc-SLC29A4-27:1
5.2 lnc-ZNF316-3:1