Transcript: lnc-ZNF316-3:2

Basic information

LNCipedia transcript ID: lnc-ZNF316-3:2 
LNCipedia gene ID: lnc-ZNF316-3
Ensembl Gene ID: ENSG00000228010
Ensembl Transcript ID: ENST00000430844
Location (hg38): chr7:6663974-6673601
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 532 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000430844.1; AC073343.13-002; OTTHUMT00000326014.1; ENST00000430844.5
Alternative gene names: ENSG00000228010.1; AC073343.13; OTTHUMG00000152372.1; ENSG00000228010.5; AC073343.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.1835 non-coding 
CPAT coding probability 23.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF316-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC073343.1-1:3
4.0 lnc-AC073343.1-1:3
4.1 lnc-AC073343.1-1:3
5.0 lnc-AC073343.1-1:3
5.1 lnc-SLC29A4-27:2
5.2 lnc-ZNF316-3:2