Transcript: lnc-ZNF33A-137:2

Basic information

LNCipedia transcript ID: lnc-ZNF33A-137:2 
LNCipedia gene ID: lnc-ZNF33A-137
Location (hg38): chr10:37309185-37347026
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 652 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000426471.1; RP11-20F24.4-001; OTTHUMT00000047595.1; NONHSAT012768
Alternative gene names: ENSG00000235687.2; RP11-20F24.4; OTTHUMG00000017971.1; ENSG00000235687.4; LINC00993;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.1665 non-coding 
CPAT coding probability 1.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF33A-137:2 no no no no

Available literature

  1. Chen (2015), Microarray expression profiling of dysregulated long non-coding RNAs in triple-negative breast cancer., Cancer Biol. Ther.
  2. Shen (2015), Identification of novel long non-coding RNAs in triple-negative breast cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANKRD30A-2:1
4.0 LINC00993:2
4.1 LINC00993:2
5.0 LINC00993:2
5.1 lnc-NPY4R2-137:2
5.2 lnc-ZNF33A-137:2