Transcript: lnc-ZNF33A-137:5

Basic information

LNCipedia transcript ID: lnc-ZNF33A-137:5 
LNCipedia gene ID: lnc-ZNF33A-137
RefSeq ID: NR_104061
Location (hg38): chr10:37309186-37347029
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 654 bp
Exons: 5
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_104061.1
Alternative gene names: LINC00993


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -2.1665 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF33A-137:5 no no no no

Available literature

  1. Chen (2015), Microarray expression profiling of dysregulated long non-coding RNAs in triple-negative breast cancer., Cancer Biol. Ther.
  2. Shen (2015), Identification of novel long non-coding RNAs in triple-negative breast cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-NPY4R2-137:5
5.1 lnc-NPY4R2-137:5
5.2 lnc-ZNF33A-137:5