Transcript: lnc-ZNF33A-137:6

Basic information

LNCipedia transcript ID: lnc-ZNF33A-137:6 
LNCipedia gene ID: lnc-ZNF33A-137
Location (hg38): chr10:37311156-37346910
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 425 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000435629.1; RP11-20F24.4-002; OTTHUMT00000047596.1; NONHSAT012769; ENST00000435629.5
Alternative gene names: ENSG00000235687.2; RP11-20F24.4; OTTHUMG00000017971.1; ENSG00000235687.4; LINC00993; ENSG00000235687.8;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.1665 non-coding 
CPAT coding probability 1.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF33A-137:6 no no no no

Available literature

  1. Chen (2015), Microarray expression profiling of dysregulated long non-coding RNAs in triple-negative breast cancer., Cancer Biol. Ther.
  2. Shen (2015), Identification of novel long non-coding RNAs in triple-negative breast cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANKRD30A-2:2
4.0 LINC00993:5
4.1 LINC00993:5
5.0 LINC00993:5
5.1 lnc-NPY4R2-137:6
5.2 lnc-ZNF33A-137:6