Transcript: lnc-ZNF33A-1:1

Basic information

LNCipedia transcript ID: lnc-ZNF33A-1:1 
LNCipedia gene ID: lnc-ZNF33A-1
Ensembl Gene ID: ENSG00000226447
Ensembl Transcript ID: ENST00000412789
Location (hg38): chr10:37976825-37992467
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 444 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000412789; ENST00000412789.1; RP11-393J16.4-001; OTTHUMT00000331602.1; NONHSAT012799
Alternative gene names: ENSG00000226447; RP11-393J16.4; ENSG00000226447.1; OTTHUMG00000153548.2; AL117337.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.1535 non-coding 
CPAT coding probability 4.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF33A-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF33A-1:1
3.1 lnc-ZNF33A-1:1
4.0 lnc-ZNF33A-1:1
4.1 lnc-ZNF33A-1:1
5.0 lnc-ZNF33A-1:1
5.1 lnc-NPY4R2-125:1
5.2 lnc-ZNF33A-1:1