Transcript: lnc-ZNF37A-1:1

Basic information

LNCipedia transcript ID: lnc-ZNF37A-1:1 
LNCipedia gene ID: lnc-ZNF37A-1
Location (hg38): chr10:38164648-38178030
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 428 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000419779; ENST00000419779.1; RP11-508N22.9-001; OTTHUMT00000047618.1; NONHSAT012811
Alternative gene names: ENSG00000241125; RP11-508N22.9; ENSG00000241125.1; OTTHUMG00000017984.1; ENSG00000224761.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.2104 non-coding 
CPAT coding probability 1.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF37A-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF37A-1:1
3.1 lnc-ZNF37A-1:1
4.0 lnc-ZNF37A-1:1
4.1 lnc-ZNF37A-1:1
5.0 lnc-ZNF37A-1:1
5.1 lnc-NPY4R2-119:1
5.2 lnc-ZNF37A-1:1