Transcript: lnc-ZNF37A-2:1

Basic information

LNCipedia transcript ID: lnc-ZNF37A-2:1 
LNCipedia gene ID: lnc-ZNF37A-2
Location (hg38): chr10:38247922-38333155
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 425 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000450980; ENST00000450980.1; RP11-672F9.1-001; OTTHUMT00000047630.1; NONHSAT012815
Alternative gene names: ENSG00000226113; RP11-672F9.1; ENSG00000226113.1; OTTHUMG00000017992.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 262.21 coding 
CPAT coding probability 25.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZNF37A-2:1 no no no no

Available literature

  1. Fang (2014), Long non-coding RNAs are differentially expressed in hepatocellular carcinoma cell lines with differing metastatic potential., Asian Pac. J. Cancer Prev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF37A-2:1
3.1 lnc-ZNF37A-2:1
4.0 lnc-ZNF37A-2:1
4.1 lnc-ZNF37A-2:1
5.0 lnc-ZNF37A-2:1
5.1 lnc-NPY4R2-117:1
5.2 lnc-ZNF37A-2:1