Transcript: lnc-ZNF423-3:1

Basic information

LNCipedia transcript ID: lnc-ZNF423-3:1 
LNCipedia gene ID: lnc-ZNF423-3
Ensembl Gene ID: ENSG00000259843
Ensembl Transcript ID: ENST00000568130
Location (hg38): chr16:50046429-50066224
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 498 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568130.2; RP11-429P3.3-001; OTTHUMT00000423139.2; NONHSAT142392
Alternative gene names: ENSG00000259843.2; RP11-429P3.3; OTTHUMG00000173448.2; AC007610.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.6807 non-coding 
CPAT coding probability 3.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF423-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF423-3:1
4.0 lnc-ZNF423-3:1
4.1 lnc-ZNF423-3:1
5.0 lnc-ZNF423-3:1
5.1 lnc-CFAP20-143:5
5.2 lnc-ZNF423-3:1