Transcript: lnc-ZNF438-1:5

Basic information

LNCipedia transcript ID: lnc-ZNF438-1:5 
LNCipedia gene ID: lnc-ZNF438-1
Location (hg38): chr10:31322010-31358590
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 577 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000559962.1; RP11-192P3.4-001; OTTHUMT00000419098.1; NONHSAT012616
Alternative gene names: ENSG00000259552.1; RP11-192P3.4; OTTHUMG00000172557.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -52.1207 non-coding 
CPAT coding probability 0.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF438-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL117340.1-1:1
4.0 lnc-AL117340.1-1:1
4.1 lnc-AL117340.1-1:1
5.0 lnc-AL117340.1-1:1
5.1 lnc-MPP7-71:2
5.2 lnc-ZNF438-1:5