Transcript: lnc-ZNF473-1:1

Basic information

LNCipedia transcript ID: lnc-ZNF473-1:1 
LNCipedia gene ID: lnc-ZNF473-1
Ensembl Gene ID: ENSG00000204666
Ensembl Transcript ID: ENST00000527209
Location (hg38): chr19:50050589-50066793
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 1525 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000527209; ENST00000527209.1; CTD-2126E3.1-001; OTTHUMT00000384643.1; NONHSAT067308
Alternative gene names: ENSG00000204666; CTD-2126E3.1; ENSG00000204666.3; OTTHUMG00000165525.1; FLJ26850; AC010624.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.1812 non-coding 
CPAT coding probability 64.60% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZNF473-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF473-1:1
3.1 lnc-ZNF473-1:1
4.0 lnc-ZNF473-1:1
4.1 lnc-ZNF473-1:1
5.0 lnc-ZNF473-1:1
5.1 lnc-PRRG2-25:1
5.2 lnc-ZNF473-1:1