Transcript: lnc-ZNF485-3:1

Basic information

LNCipedia transcript ID: lnc-ZNF485-3:1 
LNCipedia gene ID: lnc-ZNF485-3
Ensembl Gene ID: ENSG00000228426
Ensembl Transcript ID: ENST00000418426
Location (hg38): chr10:43665668-43667005
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 462 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017820; ENST00000418426; ENST00000418426.1; RP11-402L1.11-001; OTTHUMT00000047721.1; NONHSAT012987
Alternative gene names: XLOC_008470; linc-TMEM72-5; ENSG00000228426; RP11-402L1.11; ENSG00000228426.1; OTTHUMG00000018041.1; AL645634.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.6744 non-coding 
CPAT coding probability 1.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF485-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF485-1:1
3.1 lnc-ZNF485-3:1
4.0 lnc-ZNF485-3:1
4.1 lnc-ZNF485-3:1
5.0 lnc-ZNF485-3:1
5.1 lnc-NPY4R2-71:1
5.2 lnc-ZNF485-3:1