Transcript: lnc-ZNF487-1:4

Basic information

LNCipedia transcript ID: lnc-ZNF487-1:4 
LNCipedia gene ID: lnc-ZNF487-1
Location (hg38): chr10:43420599-43421806
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 303 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00017819; ENST00000442526; ENST00000442526.1; RP11-517P14.2-001; OTTHUMT00000047701.1; NONHSAT012964
Alternative gene names: XLOC_008467; linc-ZNF485-2; ENSG00000230555; RP11-517P14.2; ENSG00000230555.1; OTTHUMG00000018028.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -142.5367 non-coding 
CPAT coding probability 0.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF487-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF487P-1:2
3.1 lnc-ZNF487P-1:2
4.0 lnc-ZNF487P-1:2
4.1 lnc-ZNF487P-1:2
5.0 lnc-ZNF487P-1:2
5.1 lnc-NPY4R2-80:4
5.2 lnc-ZNF487-1:4