Transcript: lnc-ZNF516-4:3

Basic information

LNCipedia transcript ID: lnc-ZNF516-4:3 
LNCipedia gene ID: lnc-ZNF516-4
Ensembl Gene ID: ENSG00000264595
Ensembl Transcript ID: ENST00000582755
Location (hg38): chr18:76227990-76233387
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 594 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000582755.1; RP11-94B19.5-001; OTTHUMT00000444927.1; NONHSAT059918
Alternative gene names: ENSG00000264595.1; RP11-94B19.5; OTTHUMG00000179133.1; AC103808.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -114.4787 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF516-4:3 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF516-2:1
4.0 lnc-ZNF516-4:3
4.1 lnc-ZNF516-4:3
5.0 lnc-ZNF516-4:3
5.1 lnc-PQLC1-32:9
5.2 lnc-ZNF516-4:3