Transcript: lnc-ZNF546-4:1

Basic information

LNCipedia transcript ID: lnc-ZNF546-4:1 
LNCipedia gene ID: lnc-ZNF546-4
Location (hg38): chr19:40056262-40057766
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1505 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000039298.1|FTMT27600001813.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 5.1777 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF546-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ZNF546-4:1
5.0 lnc-ZNF546-4:1
5.1 lnc-MAP3K10-5:1
5.2 lnc-ZNF546-4:1