Transcript: lnc-ZNF608-1:2

Basic information

LNCipedia transcript ID: lnc-ZNF608-1:2 
LNCipedia gene ID: lnc-ZNF608-1
Ensembl Gene ID: ENSG00000249261
Ensembl Transcript ID: ENST00000510242
Location (hg38): chr5:124868972-124869914
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 943 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000510242; ENST00000510242.1; RP11-284A20.2-001; OTTHUMT00000371296.1; NONHSAT103541
Alternative gene names: ENSG00000249261; RP11-284A20.2; ENSG00000249261.1; OTTHUMG00000162995.1; AC109464.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.2096 non-coding 
CPAT coding probability 0.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF608-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF608-1:2
3.1 lnc-ZNF608-1:2
4.0 lnc-ZNF608-1:2
4.1 lnc-ZNF608-1:2
5.0 lnc-ZNF608-1:2
5.1 lnc-LOX-36:2
5.2 lnc-ZNF608-1:2