Transcript: lnc-ZNF644-1:4

Basic information

LNCipedia transcript ID: lnc-ZNF644-1:4 
LNCipedia gene ID: lnc-ZNF644-1
Location (hg38): chr1:90831525-90851618
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 808 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000435649; ENST00000435649.1; RP4-665J23.1-002; OTTHUMT00000027725.1
Alternative gene names: ENSG00000233593; RP4-665J23.1; ENSG00000233593.1; OTTHUMG00000010018.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.4055 non-coding 
CPAT coding probability 1.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF644-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF644-1:4
3.1 lnc-ZNF644-1:4
4.0 lnc-ZNF644-1:4
4.1 lnc-ZNF644-1:4
5.0 lnc-ZNF644-1:4
5.1 lnc-ZNF644-1:4
5.2 lnc-ZNF644-1:4