Transcript: lnc-ZNF644-1:5

Basic information

LNCipedia transcript ID: lnc-ZNF644-1:5 
LNCipedia gene ID: lnc-ZNF644-1
Ensembl Gene ID: ENSG00000233593
Ensembl Transcript ID: ENST00000606660
Location (hg38): chr1:90829547-90851618
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2786 bp
Exons: 2
Sources: Broad Institute; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000089; NONHSAT004412; ENST00000606660.1
Alternative gene names: XLOC_000915; linc-BARHL2; ENSG00000233593.2; RP4-665J23.1; ENSG00000233593.7; ENSG00000233593.8; AL590094.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.4055 non-coding 
CPAT coding probability 1.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF644-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF644-1:5
3.1 lnc-ZNF644-1:5
4.0 lnc-ZNF644-1:5
4.1 lnc-ZNF644-1:5
5.0 lnc-ZNF644-1:5
5.1 lnc-ZNF644-1:5
5.2 lnc-ZNF644-1:5