Transcript: lnc-ZNF646-139:1

Basic information

LNCipedia transcript ID: lnc-ZNF646-139:1 
LNCipedia gene ID: lnc-ZNF646-139
Ensembl Gene ID: ENSG00000261124
Ensembl Transcript ID: ENST00000568708
Location (hg38): chr16:31065495-31069246
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 504 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568708.1; AC135050.5-001; OTTHUMT00000433527.1; NONHSAT141845
Alternative gene names: ENSG00000261124.1; AC135050.5; OTTHUMG00000176748.1; AC135050.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -82.9632 non-coding 
CPAT coding probability 1.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF646-139:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC135050.1-1:1
4.0 lnc-AC135050.1-1:1
4.1 lnc-AC135050.1-1:1
5.0 lnc-AC135050.1-1:1
5.1 lnc-ZNF646-2:1
5.2 lnc-ZNF646-139:1