Transcript: lnc-ZNF648-1:1

Basic information

LNCipedia transcript ID: lnc-ZNF648-1:1 
LNCipedia gene ID: lnc-ZNF648-1
Ensembl Gene ID: ENSG00000224810
Ensembl Transcript ID: ENST00000411509
Location (hg38): chr1:182062677-182069253
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2463 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000411509; ENST00000411509.1; RP11-538D16.2-001; OTTHUMT00000090795.1; NONHSAT008303
Alternative gene names: ENSG00000224810; RP11-538D16.2; ENSG00000224810.1; OTTHUMG00000037303.1; AL355482.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.3474 non-coding 
CPAT coding probability 4.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF648-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF648-1:1
3.1 lnc-ZNF648-1:1
4.0 lnc-ZNF648-1:1
4.1 lnc-ZNF648-1:1
5.0 lnc-ZNF648-1:1
5.1 lnc-SH2D1B-205:1
5.2 lnc-ZNF648-1:1