Transcript: lnc-ZNF680-39:3

Basic information

LNCipedia transcript ID: lnc-ZNF680-39:3 
LNCipedia gene ID: lnc-ZNF680-39
Ensembl Gene ID: ENSG00000268181
Ensembl Transcript ID: ENST00000616616
Location (hg38): chr7:63396345-63399209
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2281 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000616616.1
Alternative gene names: ENSG00000268181.3; RP11-73B2.7; AC073188.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 113.3478 coding 
CPAT coding probability 73.08% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZNF680-39:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ZNF680-39:3
4.1 lnc-ZNF680-39:3
5.0 lnc-ZNF680-39:3
5.1 lnc-PSPH-49:2
5.2 lnc-ZNF680-39:3