Transcript: lnc-ZNF680-4:4

Basic information

LNCipedia transcript ID: lnc-ZNF680-4:4 
LNCipedia gene ID: lnc-ZNF680-4
Ensembl Gene ID: ENSG00000236299
Ensembl Transcript ID: ENST00000596569
Location (hg38): chr7:63898826-63899803
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 805 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT120948; ENST00000596569.1
Alternative gene names: ENSG00000236299.3; RP11-340I6.7; ENSG00000236299.7; AC092634.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.5069 non-coding 
CPAT coding probability 1.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF680-4:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF680-4:4
4.0 lnc-ZNF680-4:4
4.1 lnc-ZNF680-4:4
5.0 lnc-ZNF680-4:4
5.1 lnc-PSPH-56:4
5.2 lnc-ZNF680-4:4