Transcript: lnc-ZNF680-7:1

Basic information

LNCipedia transcript ID: lnc-ZNF680-7:1 
LNCipedia gene ID: lnc-ZNF680-7
Ensembl Gene ID: ENSG00000230600
Ensembl Transcript ID: ENST00000425228
Location (hg38): chr7:63380466-63385789
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 339 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000425228; ENST00000425228.1; RP11-73B2.2-001; OTTHUMT00000344028.1; NONHSAT120911
Alternative gene names: ENSG00000230600; RP11-73B2.2; ENSG00000230600.1; OTTHUMG00000156385.1; AC073188.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.4414 non-coding 
CPAT coding probability 4.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF680-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF680-7:1
3.1 lnc-ZNF680-7:1
4.0 lnc-ZNF680-7:1
4.1 lnc-ZNF680-7:1
5.0 lnc-ZNF680-7:1
5.1 lnc-PSPH-46:1
5.2 lnc-ZNF680-7:1