Transcript: lnc-ZNF705D-2:22

Basic information

LNCipedia transcript ID: lnc-ZNF705D-2:22 
LNCipedia gene ID: lnc-ZNF705D-2
RefSeq ID: NR_027425
Location (hg38): chr8:12115782-12151189
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1071 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000434078.2; FAM66D-201; NONHSAT125114; NR_027425; NR_027425.1
Alternative gene names: ENSG00000255052.2; FAM66D; OTTHUMG00000165269.2; ENSG00000255052.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 134.8868 coding 
CPAT coding probability 68.12% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZNF705D-2:22 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med
  2. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF705D-1:2
4.0 lnc-AC130352.1-2:4
4.1 lnc-AC130352.1-2:4
5.0 lnc-AC130352.1-2:4
5.1 lnc-DEFB106A-82:3
5.2 lnc-ZNF705D-2:22