Transcript: lnc-ZNF705D-2:24

Basic information

LNCipedia transcript ID: lnc-ZNF705D-2:24 
HGNC Gene Symbol: lnc-ZNF705D-2    
HGNC Full Gene Name: family with sequence similarity 66 member D
Ensembl Gene ID: ENSG00000255052
Ensembl Transcript ID: ENST00000434078
Location (hg38): chr8:12115782-12177550
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 918 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000434078.3
Alternative gene names: ENSG00000255052.4; FAM66D


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 134.8868 coding 
CPAT coding probability 68.30% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZNF705D-2:24 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med
  2. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC130352.1-2:6
4.1 lnc-AC130352.1-2:6
5.0 lnc-AC130352.1-2:6
5.1 lnc-DEFB106A-82:5
5.2 lnc-ZNF705D-2:24