Transcript: lnc-ZNF705D-2:25

Basic information

LNCipedia transcript ID: lnc-ZNF705D-2:25 
LNCipedia gene ID: lnc-ZNF705D-2
Location (hg38): chr8:12115783-12122363
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 920 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT125116; ENST00000530099.2
Alternative gene names: ENSG00000255052.3; FAM66D


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 103.2311 coding 
CPAT coding probability 47.46% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZNF705D-2:25 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med
  2. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF705D-2:7
4.0 lnc-AC130352.1-2:7
4.1 lnc-AC130352.1-2:7
5.0 lnc-AC130352.1-2:7
5.1 lnc-DEFB106A-82:6
5.2 lnc-ZNF705D-2:25