Transcript: lnc-ZNF705D-2:37

Basic information

LNCipedia transcript ID: lnc-ZNF705D-2:37 
LNCipedia gene ID: lnc-ZNF705D-2
Ensembl Gene ID: ENSG00000255495
Ensembl Transcript ID: ENST00000528514
Location (hg38): chr8:12194467-12196280
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1361 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000528514.1; AC145124.2-001; OTTHUMT00000383144.2; NONHSAT125126
Alternative gene names: ENSG00000255495.1; AC145124.2; OTTHUMG00000165272.3; FAM85A; AC145124.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 45.3937 non-coding 
CPAT coding probability 6.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZNF705D-2:37 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med
  2. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF705D-2:1
4.0 lnc-AC130352.1-2:13
4.1 lnc-AC130352.1-2:13
5.0 lnc-AC130352.1-2:13
5.1 lnc-DEFB106A-82:18
5.2 lnc-ZNF705D-2:37