Transcript: lnc-ZNF705D-2:38

Basic information

LNCipedia transcript ID: lnc-ZNF705D-2:38 
LNCipedia gene ID: lnc-ZNF705D-2
Location (hg38): chr8:12194759-12195948
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 737 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00015223
Alternative gene names: XLOC_006719; linc-C8orf79-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.6701 non-coding 
CPAT coding probability 2.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF705D-2:38 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med
  2. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF705D-1:1
3.1 lnc-ZNF705D-2:2
4.0 lnc-AC130352.1-2:14
4.1 lnc-AC130352.1-2:14
5.0 lnc-AC130352.1-2:14
5.1 lnc-DEFB106A-82:19
5.2 lnc-ZNF705D-2:38