Transcript: lnc-ZNF705D-2:43

Basic information

LNCipedia transcript ID: lnc-ZNF705D-2:43 
HGNC Gene Symbol: lnc-ZNF705D-2    
HGNC Full Gene Name: family with sequence similarity 66 member A
Ensembl Gene ID: ENSG00000227888
Ensembl Transcript ID: ENST00000525829
Location (hg38): chr8:12362019-12368615
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 921 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000525829; ENST00000525829.1; FAM66A-001; OTTHUMT00000384244.1; NONHSAT125135
Alternative gene names: ENSG00000227888; FAM66A; ENSG00000227888.2; OTTHUMG00000165458.1; ENSG00000227888.3; ENSG00000227888.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 130.4645 coding 
CPAT coding probability 70.13% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZNF705D-2:43 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med
  2. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC130352.1-1:2
3.1 lnc-AC130352.1-1:2
4.0 lnc-AC130352.1-2:19
4.1 lnc-AC130352.1-2:19
5.0 lnc-AC130352.1-2:19
5.1 lnc-DEFB106A-82:24
5.2 lnc-ZNF705D-2:43