Transcript: lnc-ZNF705D-2:46

Basic information

LNCipedia transcript ID: lnc-ZNF705D-2:46 
HGNC Gene Symbol: lnc-ZNF705D-2    
HGNC Full Gene Name: family with sequence similarity 66 member A
Ensembl Gene ID: ENSG00000227888
Ensembl Transcript ID: ENST00000602658
Location (hg38): chr8:12362382-12388296
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 546 bp
Exons: 6
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT125137; ENST00000602658.1
Alternative gene names: ENSG00000227888.3; FAM66A; ENSG00000227888.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.7994 non-coding 
CPAT coding probability 1.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF705D-2:46 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med
  2. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF705D-2:13
4.0 lnc-AC130352.1-2:22
4.1 lnc-AC130352.1-2:22
5.0 lnc-AC130352.1-2:22
5.1 lnc-DEFB106A-82:27
5.2 lnc-ZNF705D-2:46