Transcript: lnc-ZNF705D-2:50

Basic information

LNCipedia transcript ID: lnc-ZNF705D-2:50 
LNCipedia gene ID: lnc-ZNF705D-2
RefSeq ID: NR_040092
Location (hg38): chr8:12437013-12566845
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2296 bp
Exons: 6
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT125147; NR_040092; NR_040092.1
Alternative gene names: LOC100506990


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.9677 non-coding 
CPAT coding probability 12.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF705D-2:50 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med
  2. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF705D-2:16
4.0 lnc-AC130352.1-2:26
4.1 lnc-AC130352.1-2:26
5.0 lnc-AC130352.1-2:26
5.1 lnc-DEFB106A-82:31
5.2 lnc-ZNF705D-2:50