Transcript: lnc-ZNF706-5:1

Basic information

LNCipedia transcript ID: lnc-ZNF706-5:1 
LNCipedia gene ID: lnc-ZNF706-5
Ensembl Gene ID: ENSG00000254084
Ensembl Transcript ID: ENST00000519793
Location (hg38): chr8:101411873-101452452
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 578 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000519793; ENST00000519793.1; KB-1930G5.4-001; OTTHUMT00000380526.1; NONHSAT128061
Alternative gene names: ENSG00000254084; KB-1930G5.4; ENSG00000254084.1; OTTHUMG00000164832.1; AP001208.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -262.3371 non-coding 
CPAT coding probability 9.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF706-5:1 no no no no

Available literature

  1. Ding (2015), Genetics of RA susceptibility, what comes next?, RMD Open


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF706-4:1
3.1 lnc-ZNF706-5:1
4.0 lnc-ZNF706-5:1
4.1 lnc-ZNF706-5:1
5.0 lnc-ZNF706-5:1
5.1 lnc-ZNF706-5:1
5.2 lnc-ZNF706-5:1