Transcript: lnc-ZNF727-17:4

Basic information

LNCipedia transcript ID: lnc-ZNF727-17:4 
LNCipedia gene ID: lnc-ZNF727-17
Ensembl Gene ID: ENSG00000229301
Ensembl Transcript ID: ENST00000418297
Location (hg38): chr7:63354457-63359306
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 528 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000418297; ENST00000418297.1; RP5-905H7.8-001; OTTHUMT00000343682.1; NONHSAT120907
Alternative gene names: ENSG00000229301; RP5-905H7.8; ENSG00000229301.1; OTTHUMG00000156273.1; AC006455.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 30.8963 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF727-17:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC006455.1-2:1
3.1 lnc-AC006455.1-2:1
4.0 lnc-AC006455.1-2:1
4.1 lnc-AC006455.1-2:1
5.0 lnc-AC006455.1-2:1
5.1 lnc-TPST1-86:4
5.2 lnc-ZNF727-17:4