Transcript: lnc-ZNF778-1:6

Basic information

LNCipedia transcript ID: lnc-ZNF778-1:6 
LNCipedia gene ID: lnc-ZNF778-1
Location (hg38): chr16:89297508-89298309
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 402 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000563087.1; AC137932.5-001; OTTHUMT00000430484.1; NONHSAT144512
Alternative gene names: ENSG00000260279.1; AC137932.5; OTTHUMG00000175558.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.0691 non-coding 
CPAT coding probability 0.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF778-1:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC009113.1-1:1
4.0 lnc-AC009113.1-1:1
4.1 lnc-AC009113.1-1:1
5.0 lnc-AC009113.1-1:1
5.1 lnc-SPG7-13:4
5.2 lnc-ZNF778-1:6