Transcript: lnc-ZNF778-1:8

Basic information

LNCipedia transcript ID: lnc-ZNF778-1:8 
LNCipedia gene ID: lnc-ZNF778-1
Ensembl Gene ID: ENSG00000260279
Ensembl Transcript ID: ENST00000564394
Location (hg38): chr16:89297856-89298316
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 273 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564394.1; AC137932.5-002; OTTHUMT00000430485.1; NONHSAT144513
Alternative gene names: ENSG00000260279.1; AC137932.5; OTTHUMG00000175558.1; ENSG00000260279.2; AC137932.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -172.7922 non-coding 
CPAT coding probability 1.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF778-1:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC009113.1-1:2
4.0 lnc-AC009113.1-1:2
4.1 lnc-AC009113.1-1:2
5.0 lnc-AC009113.1-1:2
5.1 lnc-SPG7-13:6
5.2 lnc-ZNF778-1:8